species:   Pimic
pid:       PID1824
parent:    Pmic_miR-1
paralog:   
locus:     scaffold_12:478925-479041
matures:   ['GUUGAGCCUGAUACAGUAGCCU', 'GCUACCGUUGUCAGACUUAACGU']
srr:       SRP140519
genome:    /Users/jax/+Genomes/Fungal_genomes/Pimic.Pismi1_AssemblyScaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Wong-Bajracharya2022-kz.SRP140519.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Wong-Bajracharya2022-kz.SRP140519.cram scaffold_12:478925-479041

8 out of bounds
21 alignments
20 proper strand
20 stranded perfect matches

************************                                                                     ************************
UGCUACCGUUGUCAGACUUAACGUGAAACGUGCAGGAAUGCAGGUGCGCUAGUAAUAUCAGGCUUCACUCUUGUAUCAUUCUCAGGCCGCCUCAGGUUGAGCCUGAUACAGUAGCCU
.(((((.((.(((((.((((((.(((..((.((..(((((((((.(.(..(((........))).).).))))))).....))..))))..))).)))))).))))))).)))))..
-----------------------------------------------------------------------------------------------GUUGAGCCUGAUACAGUAGCCU l=22 a=10 c
-GCUACCGUUGUCAGACUUAACGU--------------------------------------------------------------------------------------------- l=23 a=1 c*
-----------------------------------------------------------------------------------------------GUUGAGCCUGAUACAGUAGCCU l=22 a=10 ma
-GCUACCGUUGUCAGACUUAACGU--------------------------------------------------------------------------------------------- l=23 a=1 ma*

-----------------------------------------------------------------------------------------------GUUGAGCCUGAUACAGUAGCCU l=22 a=10 (c,ma)
----------------------------------------------------------------------------------------------GGUUGAGCCUGAUACAGUAGCCU l=23 a=1 
--------------------------------------------------------------------------------------------CAGGUUGAGCCUGAUACAGUAGCCU l=25 a=2 
----------------------------------------------------------------------------------CAGGCCGCCU------------------------- l=10 a=1 
-GCUACCGUUGUCAGACUUAACG---------------------------------------------------------------------------------------------- l=22 a=4 
-GCUACCGUUGUCAGACUUAACGU--------------------------------------------------------------------------------------------- l=23 a=1 (c*,ma*)
UGCUACCGUUGUCAGACUUAACGUGAAACG--------------------------------------------------------------------------------------- l=30 a=1 

mb-01111
ax-1111111
ku-01
ss-101111111111
fn-111
